PRKN: A Pathogenic Gene of Parkinson's Disease (PD)

Parkinson's disease (PD) is a neurodegenerative disorder that affects behavior and motor skills. In this article, we review the background information, research insights, and applications related to PRKN, a pathogenic gene of PD. 

Background Information - PRKN Gene

Note: the mark “√” represents the corresponding models that available from Cyagen AI  Knockout Mouse Model eBank.

Overview of PRKN Gene Research

Parkin, encoded by PRKN gene, is one of the largest human genes with a length of 1.38 million bp. The Prkn gene in mice and rats is also around 1.2 million bp in length. The human Parkin protein, an E3 ubiquitin ligase consisting of 465 amino acids, is responsible for attaching ubiquitin, a signal described as “the molecular kiss of death” to the targeted protein for recognition and breakdown by the protease. The human PRKN protein does not have much difference in length compared to the protein in mice and rats, however, they vary greatly in major RNA derivatives of PRKN. The length of major transcripts in humans are almost 2.7 times that of rats. However, the number of amino acid bases in the protein is roughly the same across these species.

PRKN is a recessively inherited gene of Parkinson's disease (PD); in other words, humans develop PD only when the gene is recessively homozygous. Figure 1 shows different structures and mutations of Parkin protein. The item on the left represents ubiquitin binding region (UBL), followed by linker region (Linker), ring finger domain 0 (RING0) and typical RBR structure (RING1-IBR-RING2), where the REP structure contains rich cysteine.

Figure 1: Human mutation sites in the population, where the red represents pathogenic mutation sites, and black indicates unknown effect. DOI: 10.3233/JPD-160989.

In PD, Parkin protein mainly affects mitochondrial function, calcium homeostasis, synaptic function, lysosomal/proteasomal degradation, neuroinflammation, protein folding, apoptosis, oxidization, and ion damage. This protein also plays an important role in the development of tumors. When the Parkin protein does not function well, the growth and proliferation will become out of control. The unchanneled cellular energy thus caused will inhibit cell death, affect genome stability, and induce angiogenesis.

Figure 2: Role of Parkin in Parkinson's disease and cancer. DOI: 10.1007/s12035-018-0879-1

Under normal circumstances, Parkin (PARK2) can label CyclinE and other proteins with ubiquitin, and guide proteases to degrade them. However, when the protein-coding gene mutation causes abnormalities in the protein, it will not be able to perform the function of ubiquitination normally, thus resulting in the aggregation of some cyclins and other functional proteins. Additionally, it may cause abnormal proliferation in cells with mitotic conditions and apoptosis in neurons without mitotic conditions (Figure 3).

Figure 3: Quoted from DOI: 10.1007/s12035-018-0879-1

Expression of PRKN Gene in Human Tissues

Figure 4: mRNA relative expression of PRKN gene in humans and mice. The expression of this gene in brain tissue and testis is significantly higher than that in other tissues. In addition, the expression of this gene is also high in human heart and kidney, even higher than that in human brain, where such gene is used to be studied. The expression of this gene in human adrenal glands is higher than the average (the expression is expressed by the normalized relative value rather than the direct RPKM data; such comparison is only limited to the same species rather than in between mice and human). Source: NCBI.

Since the first pathogenic gene of PD was identified in the 1990s, an increasing importance has been attached to the genetic influence on in the pathogenesis of PD. This month, our Weekly Gene series has focused on genes related to a range of neurodegenerative diseases, such as Huntington’s disease (HD), PD, and more. 

Find more PD related mouse models in our selection of research-ready Cyagen Knockout Catalog Models.

>> Search Your Gene of Interest

Neurodegenerative Disease Related Resource:

>> Advancing Neurodegenerative Disease Research with Animal Models

>> SNCA: A Pathogenic Gene of Neurodegenerative Diseases

>> TARDBP: A Pathogenic Gene of Neurodegenerative Diseases

References:

1. Wahabi, K., Perwez, A. & Rizvi, M.A. Parkin in Parkinson’s Disease and Cancer: a Double-Edged Sword. Mol Neurobiol 55, 6788–6800 (2018). https://doi.org/10.1007/s12035-018-0879-1.

2. Truban, Dominika et al. ‘PINK1, Parkin, and Mitochondrial Quality Control: What Can We Learn About Parkinson’s Disease Pathobiology?’ 1 Jan. 2017 : 13 – 29.

3. Auluck PK, Caraveo G, Lindquist S. α-Synuclein: membrane interactions and toxicity in McGregor MM, Nelson AB. Circuit Mechanisms of Parkinson's Disease. Neuron. 2019;101(6):1042-1056.